Clinical Study pipeline

Description

Data model for ingesting the Clinical Study Remote Data Subscription (RDS) set from ONTOFORCE.

Remote data set content

ONTOFORCE’s Clinical Study Remote Data Subscription set covers a collection of harmonized trial protocols combined into single overarching Study reports. These offered studies are a collection of different clinical trial-related repositories (including clinicaltrials.gov, EudraCT and WHO International Clinical Trials Registry) that have been mapped together to create a single unified data set.

For details, see ONTOFORCE’s RDS sets and documentation. To access the data, please reach out to us.

Data model

The pipeline base configures the following data into canonical types:

  1. Clinical Study
    This is the main category covering the study reports from the public repositories

  2. Facility
    Linking to the Clinical Study category based on the facilities name and location where the study protocols have been executed.

  3. Study Arm
    A hidden sub-instance linking to the Clinical Study category. Each study links to one or multiple study arms visualized in tabular form in the pop-out details.

  4. Person
    Linking to the Clinical Study category based on involved Principal and Sub investigators in the study.

  5. Disease and Phenotype
    Linking to the Clinical Study category as the condition studied. Mapped with the federated category.

  6. Active Substance, Medicine and Drug Chemical
    Linking to the Clinical Study category as the tested substance. Mapped with the federated category.

  7. Publication
    Linking to the Clinical Study category as the literature published the study. Mapped with the federated category.

  8. Uncategorized
    Items linked to the Clinical Study category that have no noteworthy category.

For more information, see the Data Ingestion Configuration in the Data tab of your DISQOVER instance.

Download and import

Download the pipeline yml file(s) on your local computer. You can import the file(s) into the DISQOVER Data Ingestion Engine (in a new or existing pipeline) by clicking on the opened pipeline menu bar and choosing import. 

Pipeline_ClinicalStudy.yml

Clinical Study base pipeline to import ONTOFORCE’s published Clinical Study RDS set.